Shipping is one of the biggest line items for any Amazon seller. Whether you're using FBA, FBM, or a hybrid approach, there's almost always money being left on the table. Here are the strategies that actually move the needle.

Understand where the money goes.

Before you can optimize, you need to know where the dollars are actually flowing. Amazon's fee structure breaks down into several distinct buckets:

Most sellers focus on referral fees because they're the most visible — they show up on every order. But fulfillment and storage fees are where the real optimization opportunities live. These are the costs you can actually engineer down through packaging, inventory management, and fulfillment strategy changes.

Right-size your packaging.

Amazon's FBA fees are tiered by size and weight. Moving from "large standard" to "standard" can save $1-3 per unit. At scale, this is one of the fastest ways to reduce your per-unit cost. Strategies to consider:

This is the kind of optimization that seems small on a single unit but compounds fast. If you're shipping 5,000 units a month and you save $1.50 per unit by dropping a size tier, that's $7,500 per month — $90,000 per year — from a packaging change.

Optimize your inbound shipments.

Getting inventory into Amazon's fulfillment centers is a cost center that many sellers underestimate. The way you ship inbound directly impacts your margins:

The difference between well-optimized inbound logistics and ad hoc shipping can be $0.50-$2.00 per unit. Multiply that across your monthly volume and inbound optimization pays for itself immediately.

Manage storage to avoid penalties.

Amazon's storage fee structure is designed to penalize sellers who treat fulfillment centers like long-term warehouses. The fees escalate aggressively over time:

The last point is critical. Sellers who use a 3PL as a staging warehouse can maintain lean FBA inventory and replenish weekly or biweekly. This keeps storage fees low while avoiding stockouts. You hold the bulk of your inventory at your 3PL's lower storage rates and drip-feed into FBA as needed.

Consider a hybrid FBA + FBM approach.

Not every SKU needs to be in FBA. A hybrid fulfillment strategy lets you optimize costs at the SKU level rather than applying a one-size-fits-all approach:

This hybrid approach can cut total fulfillment costs by 15-30% depending on your catalog mix. The key is analyzing each SKU's velocity, margin, and size tier to determine the optimal fulfillment path.

Add a fulfillment node closer to your customers.

If you're shipping FBM orders from one location — especially a coast — you're paying premium zone rates for cross-country shipments. Carrier pricing is based on shipping zones, and the further a package travels, the more it costs.

Adding a 3PL in a central location like the Southeast cuts 2-4 shipping zones off east-bound orders. At scale, this is the single biggest cost reduction lever available. A brand shipping 5,000 FBM orders per month from the West Coast can save $20,000+ monthly by splitting fulfillment between a western warehouse and a central 3PL.

We wrote a full breakdown of how multi-node fulfillment works.

Negotiate carrier rates.

Your shipping rates are not fixed. If you have volume, you have leverage:

Most 3PLs have negotiated rates that reflect the aggregate volume of all their clients. Even if your individual volume wouldn't qualify for deep discounts, you benefit from the 3PL's collective bargaining power. This alone can save 15-25% on per-package shipping costs compared to retail or small-business rates.

Want to see what you could save?

Whether it's FBA prep, FBM fulfillment, or adding a second shipping node — we can model the cost savings for your specific catalog.